Lecture 12 — Encoder, Decoder, and the Truth About How LLMs Are Trained

~4–5 hours (core understanding lecture)


🧠 Why This Lecture Exists

Almost everyone uses LLMs.
Very few understand how they are actually built.

Common confusion:

  • “Is ChatGPT encoder–decoder?”
  • “Why only decoder?”
  • “What does freezing weights really mean?”
  • “How does multimodal fit into this?”
  • “What exactly am I training when I fine-tune?”

This lecture answers all of that — clearly, from first principles.


🧩 The Original Transformer (2017)

The original Transformer had two parts:


Encoder  →  Decoder

Encoder

  • Reads the input
  • Understands meaning
  • Produces representations

Decoder

  • Generates output tokens
  • Uses attention + autoregression

This was designed for:

  • Machine Translation
  • Summarization
  • Seq2Seq tasks

🧠 Encoder: What Is It Really Doing?

Encoder properties:

  • Sees the entire input at once
  • Bidirectional attention
  • Builds rich representations
  • Does not generate text

Examples:

  • BERT
  • RoBERTa
  • ViT (vision encoder)
  • Audio encoders

Encoders understand. They don’t speak.


🧠 Decoder: What Is It Really Doing?

Decoder properties:

  • Generates tokens one by one
  • Causal (masked) attention
  • Autoregressive
  • Can reason, plan, and explain

Examples:

  • GPT
  • LLaMA
  • Mistral
  • Qwen

Decoders speak, reason, and act.


❓ Why ChatGPT Is Decoder-Only

Key insight:

If you want open-ended generation, you only need a decoder.

Reasons:

  • Decoder can read context (prompt)
  • Decoder can generate indefinitely
  • Encoder is not required for generation
  • Simpler architecture
  • Scales better

So ChatGPT is:


Text → Decoder → Next Token → Next Token → ...


🧠 Decoder-Only Training (GPT Style)

Training objective:

Predict the next token

"I love deep" → predict "learning"

This single objective leads to:

  • Language understanding
  • Reasoning
  • Code generation
  • Planning

Understanding emerges from generation.


🧩 Encoder–Decoder Models (Still Important!)

Encoder–decoder models are still used when:

  • Input ≠ output
  • Strong alignment is required
  • Input is very long or structured

Examples:

  • T5
  • FLAN-T5
  • Whisper (audio → text)
  • Translation systems

🧠 Multimodal LLMs: The Hybrid Truth

Most multimodal LLMs are:

Encoder (image/audio/video)
        ↓
Projection / Adapter
        ↓
Decoder-only LLM

Examples:

  • CLIP → LLaMA
  • ViT → GPT
  • Audio encoder → LLM

Multimodal models are encoder–decoder systems, but the decoder is still the brain.


🔗 Why Encoders Are Usually Frozen

Encoders:

  • Pretrained on massive data
  • Expensive to retrain
  • General-purpose

So we often:

  • ❄️ Freeze encoder
  • 🔧 Train adapter / projector
  • 🧠 Fine-tune decoder lightly

This saves:

  • Compute
  • Data
  • Stability

🧠 What Is Actually Trained? (Very Important)

Pretraining

  • Train all weights
  • Massive data
  • Extremely expensive

Fine-tuning

  • Train some weights
  • Task-specific data

Instruction tuning

  • Train decoder to follow instructions
  • Often freezes most layers

🧩 Freezing Strategies

Strategy What Moves
Full fine-tune Everything
Freeze encoder Decoder only
LoRA Small rank matrices
Adapters Tiny modules
Prompt tuning No weights

Most real-world systems do NOT full fine-tune.


🐍 Example: Freezing Encoder

for param in vision_encoder.parameters():
    param.requires_grad = False

Then train:

  • Projection layer
  • LLM LoRA weights

🧠 LoRA Explained Simply

LoRA:

  • Injects low-rank matrices
  • Keeps original weights frozen
  • Learns task-specific behavior

Benefits:

  • Cheap
  • Stable
  • Shareable
  • Reversible

LoRA is how the world fine-tunes LLMs today.


❓ Why Not Encoder-Only LLMs?

Encoder-only models:

  • Cannot generate freely
  • Need a decoder for output
  • Not conversational

That’s why:

  • BERT ≠ ChatGPT
  • ViT ≠ multimodal assistant

🧠 Mental Model (Remember This Forever)

Role Model Type
Understand Encoder
Reason Decoder
Speak Decoder
Act Decoder + Tools
See Vision Encoder
Hear Audio Encoder

🧪 Student Knowledge Check (Hidden)

Q1 — Objective

Why can ChatGPT work without an encoder?

Answer

Because a decoder can read context and generate text autoregressively.


Q2 — MCQ

Which model is encoder-only?

A. GPT B. LLaMA C. BERT D. ChatGPT

Answer

C. BERT


Q3 — MCQ

What is usually frozen in multimodal LLMs?

A. Decoder B. Encoder C. Tokenizer D. Loss function

Answer

B. Encoder


Q4 — Objective

Why use LoRA instead of full fine-tuning?

Answer

To reduce cost, preserve knowledge, and improve stability.


Q5 — Objective

Who is the “brain” of a multimodal LLM?

Answer

The decoder-only LLM.


🌱 Final Reflection

If intelligence emerges from predicting the next token, what does that say about human thinking?

That reasoning may emerge from sequence prediction guided by experience.


✅ Final Takeaways (Burn This In)

  • ChatGPT is decoder-only
  • Encoders understand, decoders generate
  • Multimodal = encoders + decoder brain
  • Freezing is strategy, not weakness
  • Fine-tuning is about what to move

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